Open-source tools for computational and mathematical analysis of neuronal structure.
Software developed and used across our research in topology, neuronal morphology, classification and computational synthesis.
Topological Morphology Descriptor
Topological analysis and representation of neuronal morphologies using persistence-based descriptors.
Developed byLida Kanari, TMD contributors
Originally developed within the Blue Brain Project at EPFL.
Toolkit for the analysis and processing of neuronal morphologies.
Developed byNeuroM contributors
Developed within the Blue Brain Project at EPFL.
Utilities for processing and transforming neuronal morphology data.
Developed bymorph-tool contributors
Part of the Blue Brain Project morphology software ecosystem.
Library for reading, writing and manipulating neuronal morphology data.
Developed byMorphIO contributors
Developed within the Blue Brain Project at EPFL.
Software for repair and processing of neuronal morphology reconstructions.
Developed byNeuroR contributors
Developed within the Blue Brain Project at EPFL.
Computational workflows for neuronal morphology processing and analysis.
Developed byMorphology Workflows contributors
Developed within the Blue Brain Project morphology software ecosystem.
Machine-learning tools for classification of neuronal morphologies.
Developed byMorphoClass contributors
Developed within the Blue Brain Project at EPFL.
Software for computational synthesis of neuronal morphologies.
Developed byLida Kanari and NeuroTS contributors
Developed within the Blue Brain Project at EPFL.
Computational tools for generating long-range neuronal axonal morphologies.
Developed byAdrien Berchet and Axon Synthesis contributors
Developed within the Blue Brain Project at EPFL.
Analysis and classification of long-range axonal morphologies based on their projection patterns across brain regions.
Developed byRemy Petkantchin and Axon Projection contributors
Originally developed within the Blue Brain Project.